Miniconda installation
Below is a bash script to install Miniconda and set up a root environment containing all the libraries that I routinely use and that are necessary to
replicate the examples given in this blog.
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#!/usr/bin/env bash # DOWNLOAD AND INSTALLS THE MINICONDA Python distribution # and a suite of Scientific Python packages # Nicolas Fauchereau <Nicolas.Fauchereau@niwa.co.nz> # 13/08/2015 # ============================================================================== # download the minimal anaconda distribution (! uncomment the line # corresponding to your platform [linux or mac]) #wget http://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh #wget https://repo.continuum.io/miniconda/Miniconda3-latest-MacOSX-x86_64.sh -O miniconda.sh # make the installer executable chmod +x miniconda.sh # set the installation directory, by default your HOME directory INSTALL_DIR=${HOME} # run the installer ./miniconda.sh -b -p ${INSTALL_DIR}/miniconda # add this line in the end of your .bashrc (linux) or .bash_profile (mac) export PATH=${INSTALL_DIR}/miniconda/bin:${PATH} # update conda (the package and environment manager) to the latest version ${INSTALL_DIR}/miniconda/bin/conda update --yes conda # install the required packages into # $INSTALL_DIR/miniconda/lib/python3.4/site-packages # NOTE: this package list might be expanded in the future, so I might # want to read if off a "requirements.txt" file ... packages=("ipython-notebook" "numpy" "scipy" "pandas" "matplotlib" "basemap" "netcdf4" "xray" "seaborn" "scikit-learn" "statsmodels" "odo" "dask" "pyproj" "gdal" "fiona" "shapely" "rasterio" ) for item in ${packages[*]} do echo "====================================================================="; echo "installing ${item}"; ${INSTALL_DIR}/miniconda/bin/conda install --yes ${item}; done # install pip ${INSTALL_DIR}/miniconda/bin/conda install --yes pip; # install palettable ${INSTALL_DIR}/miniconda/bin/pip install palettable --proxy http://proxy_url:port |